Our research focuses on developing innovative experimental methods as well as novel computational tools for spatially resolved omics in mammalian and plant tissue sections.

You can find out more about our team and our academic research activities under the Research section.

adiposetissue.org: A knowledge portal integrating clinical and experimental data from human adipose tissue
Zhong J, Zareifi D, Weinbrenner S, Hansen M, Klingelhuber F, Nono Nankam PA, Frendo-Cumbo S, Bhalla N, Cordeddu L, de Castro Barbosa T, Arner P, Dahlman I, Muniandy M, Heinonen S, Pietiläinen KH, Hoffmann A, Ghosh A, John D, Tönjes A, Ståhl PL, Böttcher Y, Keller M, Kovacs P, Kerr AG, Langin D, Wolfrum C, Blüher M, Krahmer N, Massier L, Mejhert N, Rydén M
Cell Metabolism, 14 February 2025

Spatially resolved integrative analysis of transcriptomic and metabolomic changes in tissue injury studies
Williams EC, Franzén L, Olsson Lindvall M, Hamm G, Oag S, Majumder MM, Denholm J, Hamidinekoo A, Escudero Morlanes J, Vicari M, Lundeberg J, Setyo L, Zakirov A, Hornberg JJ, Stamou M, Ståhl PL, Ollerstam A, Tan J, Mohorianu I
bioRxiv, 2 March 2025

scTrends: A living review of commercial single-cell and spatial ‘omic technologies
De Jonghe J, Opzoomer JW, Vilas-Zornoza A, Nilges BS, Crane P, Vicari M, Lee H, Lara-Astiaso D, Gross T, Morf J, Schneider K, Cudini J, Ramos-Mucci L, Mooijman D, Tiklová K, Salas SM, Langseth CM, Kashikar ND; scTrends Consortium; Schapiro D, Lundeberg J, Nilsson M, Shalek AK, Cribbs AP, Taylor-King JP
Cell Genomics, 11 December 2024

Spatial transcriptomics reveals substantial heterogeneity in triple-negative breast cancer with potential clinical implications
Wang X, Venet D, Lifrange F, Larsimont D, Rediti M, Stenbeck L, Dupont F, Rouas G, Garcia AJ, Craciun L, Buisseret L, Ignatiadis M, Carausu M, Bhalla N, Masarapu Y, Villacampa EG, Franzén L, Saarenpää S, Kvastad L, Thrane K, Lundeberg J, Rothé F, Sotiriou C.
Nature Communications, 26 November 2024

Standalone single- and bi-layered human skin 3D models supported by recombinant silk feature native spatial organization
Gkouma S, Bhalla N, Frapard S, Jönsson A, Gürbüz H, Dogan AA, Giacomello S, Duvfa M, Ståhl PL, Widhe M, Hedhammar M
Biofabrication, 5 November 2024